|
|
EMX2_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EMX2 |
|
1 |
10479 |
8412 |
12802 |
5569 |
|
TF group |
homeodomain |
|
2 |
5704 |
13337 |
10582 |
7639 |
|
Polypeptide used |
DBD |
|
3 |
834 |
7761 |
0 |
29501 |
|
Ligand sequence |
TGGTTC30NTTT |
|
4 |
37262 |
4938 |
678 |
1236 |
|
Batch of SELEX experiment |
AI |
|
5 |
37262 |
0 |
0 |
0 |
|
Seed sequence |
NNYAATTANN |
|
6 |
0 |
0 |
0 |
37262 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
0 |
4025 |
37262 |
|
SELEX cycle |
4 |
|
8 |
37262 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
9139 |
7124 |
17672 |
3328 |
|
Comment |
|
|
10 |
5970 |
13054 |
10195 |
8043 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
EMX2_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EMX2 |
|
1 |
551 |
865 |
289 |
2294 |
|
TF group |
homeodomain |
|
2 |
2420 |
739 |
313 |
368 |
|
Polypeptide used |
DBD |
|
3 |
3159 |
192 |
122 |
196 |
|
Ligand sequence |
TGGTTC30NTTT |
|
4 |
55 |
127 |
71 |
3159 |
|
Batch of SELEX experiment |
AI |
|
5 |
286 |
247 |
210 |
3159 |
|
Seed sequence |
YMATTARYTAATKR |
|
6 |
3159 |
69 |
121 |
374 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1458 |
578 |
1701 |
258 |
|
SELEX cycle |
4 |
|
8 |
448 |
1901 |
830 |
1258 |
|
Number of repeats |
dimeric |
|
9 |
668 |
169 |
205 |
3159 |
|
Comment |
|
|
10 |
3159 |
71 |
247 |
151 |
|
Representative
matrix |
no |
|
11 |
3159 |
45 |
147 |
36 |
|
|
|
|
12 |
366 |
152 |
237 |
3159 |
|
Source: |
|
|
13 |
564 |
217 |
1153 |
2006 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
2231 |
218 |
928 |
391 |
|
|
|