|
|
EMX1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EMX1 |
|
1 |
2605 |
2405 |
2861 |
1464 |
|
TF group |
homeodomain |
|
2 |
1501 |
3384 |
2287 |
2163 |
|
Polypeptide used |
DBD |
|
3 |
573 |
2959 |
35 |
6377 |
|
Ligand sequence |
TCGCAT30NACT |
|
4 |
9335 |
2519 |
299 |
987 |
|
Batch of SELEX experiment |
AI |
|
5 |
9335 |
391 |
0 |
437 |
|
Seed sequence |
NNYAATTANN |
|
6 |
0 |
0 |
0 |
9335 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
364 |
203 |
1762 |
9335 |
|
SELEX cycle |
3 |
|
8 |
9335 |
0 |
0 |
463 |
|
Number of repeats |
monomeric |
|
9 |
2340 |
2308 |
3579 |
1109 |
|
Comment |
|
|
10 |
1631 |
3712 |
2218 |
1775 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
EMX1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EMX1 |
|
1 |
186 |
629 |
84 |
962 |
|
TF group |
homeodomain |
|
2 |
1120 |
471 |
100 |
135 |
|
Polypeptide used |
DBD |
|
3 |
1591 |
73 |
28 |
69 |
|
Ligand sequence |
TCGCAT30NACT |
|
4 |
12 |
40 |
23 |
1591 |
|
Batch of SELEX experiment |
AI |
|
5 |
88 |
91 |
30 |
1591 |
|
Seed sequence |
YMATTARYTAATKR |
|
6 |
1591 |
15 |
34 |
116 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
728 |
288 |
863 |
104 |
|
SELEX cycle |
3 |
|
8 |
156 |
1039 |
228 |
552 |
|
Number of repeats |
dimeric |
|
9 |
192 |
46 |
33 |
1591 |
|
Comment |
|
|
10 |
1591 |
13 |
65 |
42 |
|
Representative matrix |
yes |
|
11 |
1591 |
13 |
23 |
8 |
|
|
|
|
12 |
106 |
44 |
76 |
1591 |
|
Source: |
|
|
13 |
203 |
115 |
572 |
1019 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
1112 |
63 |
479 |
129 |
|
|
|