ELK1_m1

 

 

 

 

A

C

G

T

 

Name

ELK1

1

6600

878

1952

1632

 

TF group

ETS

2

892

6600

788

274

 

Polypeptide used

DBD

3

357

6600

17

0

 

Ligand sequence

TCGGAA20NAGT

4

0

8

6600

0

 

Batch of SELEX experiment

AG

5

0

0

6600

20

 

Seed sequence

ACCGGAAGTN

6

6600

13

0

37

 

Hamming distance of sequences to seed

1

7

6600

105

5

869

 

SELEX cycle

2

8

1280

592

6600

110

 

Number of repeats

monomeric

9

514

1609

442

6600

 

Comment

 

10

2118

1014

2023

1445

 

Representative matrix

no

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

ELK1_m2

 

 

 

 

A

C

G

T

 

Name

ELK1

1

5106

256

787

497

 

TF group

ETS

2

275

5106

196

63

 

Polypeptide used

full

3

105

5106

6

0

 

Ligand sequence

TGAGTG20NTGA

4

0

0

5106

2

 

Batch of SELEX experiment

AG

5

14

3

5106

29

 

Seed sequence

ACCGGAAGTN

6

5106

7

2

0

 

Hamming distance of sequences to seed

1

7

5106

39

6

248

 

SELEX cycle

2

8

671

187

5106

22

 

Number of repeats

monomeric

9

194

726

156

5106

 

Comment

 

10

1752

637

1697

1020

 

Representative matrix

no

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

ELK1_d1

 

 

 

 

A

C

G

T

 

Name

ELK1

1

680

1305

748

885

 

TF group

ETS

2

2650

92

249

28

 

Polypeptide used

full

3

5

3802

227

198

 

Ligand sequence

TGAGTG20NTGA

4

237

0

18

3595

 

Batch of SELEX experiment

AG

5

1

5

0

3651

 

Seed sequence

NACTTCCGSCGGAARMN

6

1

4004

0

3

 

Hamming distance of sequences to seed

2

7

0

3945

0

2

 

SELEX cycle

3

8

8

19

4152

24

 

Number of repeats

dimeric

9

4

1983

2130

4

 

Comment

 

10

31

4137

13

73

 

Representative matrix

yes

11

15

22

4124

10

 

 

 

12

8

22

4196

9

 

 

 

13

2887

17

36

8

 

 

 

14

2844

38

17

270

 

 

 

15

896

458

2683

38

 

Source:

 

16

293

1830

334

2421

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

848

633

1410

674