|
ELK1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ELK1 |
1 |
6600 |
878 |
1952 |
1632 |
|
TF group |
ETS |
2 |
892 |
6600 |
788 |
274 |
|
Polypeptide used |
DBD |
3 |
357 |
6600 |
17 |
0 |
|
Ligand sequence |
TCGGAA20NAGT |
4 |
0 |
8 |
6600 |
0 |
|
Batch of SELEX experiment |
AG |
5 |
0 |
0 |
6600 |
20 |
|
Seed sequence |
ACCGGAAGTN |
6 |
6600 |
13 |
0 |
37 |
|
Hamming distance of sequences to seed |
1 |
7 |
6600 |
105 |
5 |
869 |
|
SELEX cycle |
2 |
8 |
1280 |
592 |
6600 |
110 |
|
Number of repeats |
monomeric |
9 |
514 |
1609 |
442 |
6600 |
|
Comment |
|
10 |
2118 |
1014 |
2023 |
1445 |
|
Representative matrix |
no |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ELK1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ELK1 |
1 |
5106 |
256 |
787 |
497 |
|
TF group |
ETS |
2 |
275 |
5106 |
196 |
63 |
|
Polypeptide used |
full |
3 |
105 |
5106 |
6 |
0 |
|
Ligand sequence |
TGAGTG20NTGA |
4 |
0 |
0 |
5106 |
2 |
|
Batch of SELEX experiment |
AG |
5 |
14 |
3 |
5106 |
29 |
|
Seed sequence |
ACCGGAAGTN |
6 |
5106 |
7 |
2 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
5106 |
39 |
6 |
248 |
|
SELEX cycle |
2 |
8 |
671 |
187 |
5106 |
22 |
|
Number of repeats |
monomeric |
9 |
194 |
726 |
156 |
5106 |
|
Comment |
|
10 |
1752 |
637 |
1697 |
1020 |
|
Representative matrix |
no |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ELK1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ELK1 |
1 |
680 |
1305 |
748 |
885 |
|
TF group |
ETS |
2 |
2650 |
92 |
249 |
28 |
|
Polypeptide used |
full |
3 |
5 |
3802 |
227 |
198 |
|
Ligand sequence |
TGAGTG20NTGA |
4 |
237 |
0 |
18 |
3595 |
|
Batch of SELEX experiment |
AG |
5 |
1 |
5 |
0 |
3651 |
|
Seed sequence |
NACTTCCGSCGGAARMN |
6 |
1 |
4004 |
0 |
3 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
3945 |
0 |
2 |
|
SELEX cycle |
3 |
8 |
8 |
19 |
4152 |
24 |
|
Number of repeats |
dimeric |
9 |
4 |
1983 |
2130 |
4 |
|
Comment |
|
10 |
31 |
4137 |
13 |
73 |
|
Representative matrix |
yes |
11 |
15 |
22 |
4124 |
10 |
|
|
|
12 |
8 |
22 |
4196 |
9 |
|
|
|
13 |
2887 |
17 |
36 |
8 |
|
|
|
14 |
2844 |
38 |
17 |
270 |
|
|
|
15 |
896 |
458 |
2683 |
38 |
|
Source: |
|
16 |
293 |
1830 |
334 |
2421 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
848 |
633 |
1410 |
674 |
|
|
|