|
|
EGR3_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EGR3 |
|
1 |
337 |
645 |
278 |
470 |
|
TF group |
C2H2 |
|
2 |
444 |
485 |
191 |
540 |
|
Polypeptide used |
DBD |
|
3 |
1031 |
701 |
10 |
20 |
|
Ligand sequence |
TTAAGA20NGAA |
|
4 |
2 |
1855 |
0 |
13 |
|
Batch of SELEX experiment |
AF |
|
5 |
66 |
32 |
2158 |
36 |
|
Seed sequence |
NNACGCCCACGCANN |
|
6 |
0 |
1856 |
2 |
0 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
0 |
1858 |
0 |
10 |
|
SELEX cycle |
3 |
|
8 |
0 |
1823 |
7 |
80 |
|
Number of repeats |
monomeric |
|
9 |
1159 |
455 |
11 |
4 |
|
Comment |
|
|
10 |
0 |
1875 |
7 |
2 |
|
Representative matrix |
no |
|
11 |
39 |
28 |
2152 |
26 |
|
|
|
|
12 |
2 |
1899 |
1 |
21 |
|
|
|
|
13 |
1262 |
54 |
168 |
80 |
|
Source: |
|
|
14 |
406 |
600 |
110 |
549 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
396 |
346 |
230 |
683 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Egr3_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Egr3 |
|
1 |
560 |
431 |
167 |
630 |
|
TF group |
C2H2 |
|
2 |
1179 |
580 |
13 |
21 |
|
Polypeptide used |
DBD |
|
3 |
0 |
1833 |
5 |
11 |
|
Ligand sequence |
TCATGC20NGTA |
|
4 |
39 |
14 |
2099 |
20 |
|
Batch of SELEX experiment |
Z |
|
5 |
1 |
1818 |
2 |
4 |
|
Seed sequence |
NACGCCCACGCANNN |
|
6 |
8 |
1819 |
4 |
4 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
4 |
1775 |
5 |
82 |
|
SELEX cycle |
3 |
|
8 |
1370 |
350 |
0 |
3 |
|
Number of repeats |
monomeric |
|
9 |
0 |
1828 |
3 |
2 |
|
Comment |
|
|
10 |
9 |
15 |
2083 |
19 |
|
Representative
matrix |
no |
|
11 |
3 |
1832 |
0 |
16 |
|
|
|
|
12 |
1477 |
51 |
103 |
35 |
|
|
|
|
13 |
558 |
474 |
138 |
594 |
|
Source: |
|
|
14 |
532 |
208 |
155 |
889 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
424 |
389 |
254 |
753 |
|
|
|