|
|
EGR2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EGR2 |
|
1 |
1157 |
679 |
94 |
142 |
|
TF group |
C2H2 |
|
2 |
0 |
1551 |
28 |
73 |
|
Polypeptide used |
DBD |
|
3 |
295 |
0 |
3731 |
222 |
|
Ligand sequence |
TCGGCC20NGA |
|
4 |
6 |
1558 |
25 |
29 |
|
Batch of SELEX experiment |
W |
|
5 |
24 |
1554 |
15 |
13 |
|
Seed sequence |
MCGCCCACGCA |
|
6 |
0 |
1468 |
38 |
277 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
2147 |
110 |
26 |
2 |
|
SELEX cycle |
3 |
|
8 |
0 |
1573 |
2 |
23 |
|
Number of repeats |
monomeric |
|
9 |
106 |
0 |
4034 |
171 |
|
Comment |
|
|
10 |
4 |
1585 |
20 |
115 |
|
Representative matrix |
no |
|
11 |
1731 |
157 |
542 |
430 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
EGR2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
EGR2 |
|
1 |
1299 |
1559 |
1000 |
1369 |
|
TF group |
C2H2 |
|
2 |
1369 |
1485 |
702 |
1647 |
|
Polypeptide used |
full |
|
3 |
2531 |
2137 |
121 |
400 |
|
Ligand sequence |
TCATCA20NCTA |
|
4 |
51 |
5528 |
26 |
76 |
|
Batch of SELEX experiment |
W |
|
5 |
584 |
49 |
4907 |
417 |
|
Seed sequence |
NNMCGCCCACGCANN |
|
6 |
9 |
5582 |
22 |
14 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
16 |
5580 |
17 |
11 |
|
SELEX cycle |
2 |
|
8 |
21 |
5040 |
0 |
874 |
|
Number of repeats |
monomeric |
|
9 |
4353 |
560 |
29 |
18 |
|
Comment |
|
|
10 |
0 |
5590 |
14 |
4 |
|
Representative
matrix |
no |
|
11 |
206 |
102 |
5297 |
236 |
|
|
|
|
12 |
20 |
5371 |
18 |
477 |
|
|
|
|
13 |
3308 |
630 |
1196 |
808 |
|
Source: |
|
|
14 |
1426 |
1586 |
682 |
1493 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
1398 |
1207 |
839 |
1715 |
|
|
|