|
EGR1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EGR1 |
1 |
478 |
462 |
295 |
681 |
|
TF group |
C2H2 |
2 |
850 |
654 |
60 |
90 |
|
Polypeptide used |
DBD |
3 |
5 |
1504 |
12 |
30 |
|
Ligand sequence |
TCTCTT20NGA |
4 |
275 |
14 |
2233 |
92 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
1521 |
12 |
19 |
|
Seed sequence |
NMCGCCCMCGCANN |
6 |
4 |
1525 |
0 |
7 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
1487 |
15 |
100 |
|
SELEX cycle |
2 |
8 |
1039 |
547 |
0 |
6 |
|
Number of repeats |
monomeric |
9 |
5 |
1530 |
0 |
2 |
|
Comment |
|
10 |
52 |
31 |
2542 |
103 |
|
Representative
matrix |
yes |
11 |
16 |
1501 |
19 |
64 |
|
|
|
12 |
1340 |
136 |
280 |
212 |
|
Source: |
|
13 |
521 |
464 |
234 |
648 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
515 |
367 |
269 |
775 |
|
|
|
|
|
|
|
|
|
|
|
|
EGR1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EGR1 |
1 |
461 |
391 |
193 |
648 |
|
TF group |
C2H2 |
2 |
1166 |
394 |
3 |
18 |
|
Polypeptide used |
full |
3 |
11 |
1616 |
3 |
6 |
|
Ligand sequence |
TACTAT20NATC |
4 |
39 |
0 |
2087 |
0 |
|
Batch of SELEX experiment |
AA |
5 |
0 |
1630 |
0 |
0 |
|
Seed sequence |
NACGCCCACGCANN |
6 |
0 |
1645 |
0 |
13 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
1642 |
0 |
34 |
|
SELEX cycle |
4 |
8 |
1221 |
307 |
7 |
0 |
|
Number of repeats |
monomeric |
9 |
0 |
1650 |
0 |
1 |
|
Comment |
|
10 |
0 |
0 |
2156 |
2 |
|
Representative matrix |
no |
11 |
0 |
1654 |
0 |
13 |
|
|
|
12 |
1308 |
20 |
160 |
30 |
|
Source: |
|
13 |
482 |
458 |
104 |
596 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
510 |
211 |
181 |
778 |
|
|
|
|
|
|
|
|
|
|
|
|
Egr1_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Egr1 |
1 |
613 |
615 |
215 |
454 |
|
TF group |
C2H2 |
2 |
612 |
586 |
70 |
628 |
|
Polypeptide used |
mouse DBD_mutant_DBD |
3 |
1190 |
706 |
7 |
22 |
|
Ligand sequence |
TGCGCC20NCG |
4 |
0 |
1896 |
1 |
5 |
|
Batch of SELEX experiment |
P |
5 |
157 |
9 |
1896 |
19 |
|
Seed sequence |
NNMCGCCCMCTCANNN |
6 |
0 |
1896 |
1 |
0 |
|
Hamming distance of sequences to seed |
1 |
7 |
3 |
1896 |
2 |
0 |
|
SELEX cycle |
4 |
8 |
0 |
1896 |
0 |
0 |
|
Number of repeats |
monomeric |
9 |
982 |
914 |
3 |
0 |
|
Comment |
Difference to Human potentially due to E410D
mutation/polymorphism |
10 |
6 |
1896 |
0 |
3 |
|
Representative
matrix |
no |
11 |
14 |
554 |
847 |
1896 |
|
|
|
12 |
3 |
1896 |
0 |
0 |
|
|
|
13 |
1896 |
122 |
77 |
31 |
|
|
|
14 |
839 |
612 |
94 |
351 |
|
Source: |
|
15 |
591 |
375 |
81 |
849 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
497 |
588 |
183 |
628 |
|
|
|