E2F3_1

 

 

 

 

A

C

G

T

 

Name

E2F3

1

14836

2518

4831

2338

 

TF group

E2F

2

19063

374

3719

450

 

Polypeptide used

DBD

3

21577

44

75

1831

 

Ligand sequence

TTACAT20NACA

4

22031

43

53

3968

 

Batch of SELEX experiment

AF

5

20106

30

854

5368

 

Seed sequence

NNAAATGGCGCCAAAANN

6

4901

63

10400

21178

 

Hamming distance of sequences to seed

2

7

501

5049

34974

1726

 

SELEX cycle

4

8

5

11

35721

0

 

Number of repeats

dimeric

9

10

24105

0

15

 

Comment

 

10

21

18

36551

6

 

Representative matrix

yes

11

7

23427

0

0

 

 

 

12

10

23428

406

21

 

 

 

13

21554

282

0

239

 

 

 

14

21631

23

51

848

 

 

 

15

21677

9

24

968

 

 

 

16

20878

56

47

2485

 

Source:

 

17

6227

6249

3615

9645

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

3794

5728

9709

8492

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

E2F3_2

 

 

 

 

A

C

G

T

 

Name

E2F3

1

1369

284

588

399

 

TF group

E2F

2

1917

46

565

36

 

Polypeptide used

DBD

3

2202

0

13

234

 

Ligand sequence

TTACAT20NACA

4

2309

0

0

184

 

Batch of SELEX experiment

AF

5

2207

0

46

466

 

Seed sequence

NNAAATGGCGCCATTTNN

6

740

0

1453

1985

 

Hamming distance of sequences to seed

2

7

53

520

3761

129

 

SELEX cycle

4

8

0

3

3871

0

 

Number of repeats

dimeric

9

0

2490

0

0

 

Comment

 

10

0

3

3985

0

 

Representative matrix

no

11

0

2429

0

0

 

 

 

12

97

2411

550

36

 

 

 

13

2024

653

0

433

 

 

 

14

1399

30

22

2424

 

 

 

15

1093

10

12

2921

 

 

 

16

437

24

14

2843

 

Source:

 

17

74

429

127

2269

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

287

712

355

1504

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

E2F3_3

 

 

 

 

A

C

G

T

 

Name

E2F3

1

9083

2961

2697

4019

 

TF group

E2F

2

6970

562

6888

6095

 

Polypeptide used

DBD

3

3583

37

40

18143

 

Ligand sequence

TTACAT20NACA

4

1913

9

58

20773

 

Batch of SELEX experiment

AF

5

1201

53

29

20312

 

Seed sequence

NNTTTTGGCGCCAAAANN

6

703

9

846

20066

 

Hamming distance of sequences to seed

2

7

32

599

26704

9

 

SELEX cycle

4

8

10

13

27166

0

 

Number of repeats

dimeric

9

5

17838

4

22

 

Comment

 

10

22

13

27719

0

 

Representative matrix

no

11

5

17302

0

3

 

 

 

12

7

17328

419

17

 

 

 

13

16092

235

25

245

 

 

 

14

15996

26

44

435

 

 

 

15

16259

15

49

295

 

 

 

16

15741

32

26

1249

 

Source:

 

17

2054

10159

2570

4716

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

3685

4260

1811

9959