E2F2_1

 

 

 

 

A

C

G

T

 

Name

E2F2

1

121

23

18

17

 

TF group

E2F

2

137

1

22

7

 

Polypeptide used

DBD

3

144

0

0

13

 

Ligand sequence

TACTCA20NCG

4

143

1

0

7

 

Batch of SELEX experiment

W

5

140

2

9

16

 

Seed sequence

AAAAATGGCGCCAAAANN

6

43

0

22

159

 

Hamming distance of sequences to seed

2

7

0

5

229

6

 

SELEX cycle

4

8

0

0

232

0

 

Number of repeats

dimeric

9

0

115

0

1

 

Comment

 

10

0

0

235

0

 

Representative matrix

no

11

0

115

0

0

 

 

 

12

0

115

0

0

 

 

 

13

142

2

0

1

 

 

 

14

145

0

0

3

 

 

 

15

143

1

0

9

 

 

 

16

131

2

0

41

 

Source:

 

17

49

23

0

79

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

47

10

102

29

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

E2F2_2

 

 

 

 

A

C

G

T

 

Name

E2F2

1

66

31

40

10

 

TF group

E2F

2

59

16

45

38

 

Polypeptide used

DBD

3

23

0

0

166

 

Ligand sequence

TACTCA20NCG

4

11

3

3

171

 

Batch of SELEX experiment

W

5

14

2

2

165

 

Seed sequence

NNTTTTGGCGCCAAAANN

6

5

1

6

172

 

Hamming distance of sequences to seed

2

7

1

2

227

0

 

SELEX cycle

4

8

0

0

230

0

 

Number of repeats

dimeric

9

0

106

0

0

 

Comment

 

10

0

0

234

0

 

Representative matrix

no

11

0

105

0

0

 

 

 

12

0

105

3

1

 

 

 

13

135

4

2

2

 

 

 

14

136

2

0

4

 

 

 

15

133

1

0

8

 

 

 

16

133

1

2

9

 

Source:

 

17

41

25

7

75

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

35

31

75

22

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

E2F2_3

 

 

 

 

A

C

G

T

 

Name

E2F2

1

40

0

0

3

 

TF group

E2F

2

41

0

0

2

 

Polypeptide used

DBD

3

41

0

0

1

 

Ligand sequence

TACTCA20NCG

4

34

1

3

13

 

Batch of SELEX experiment

W

5

17

1

8

46

 

Seed sequence

AAAATGGCGCCATTTT

6

0

6

68

2

 

Hamming distance of sequences to seed

2

7

0

0

68

0

 

SELEX cycle

4

8

0

31

0

0

 

Number of repeats

dimeric

9

0

0

70

0

 

Comment

< 100 counts

10

0

31

0

0

 

Representative matrix

no

11

0

31

3

0

 

 

 

12

36

3

0

8

 

 

 

13

19

1

0

42

 

 

 

14

9

0

0

51

 

Source:

 

15

1

0

0

52

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

9

3

1

37