|
|
DPRX_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
DPRX |
|
1 |
2272 |
1422 |
2165 |
1243 |
|
TF group |
homeodomain |
|
2 |
1478 |
2347 |
2143 |
1134 |
|
Polypeptide used |
DBD |
|
3 |
2475 |
805 |
7101 |
653 |
|
Ligand sequence |
TCGAAG30NAAT |
|
4 |
589 |
283 |
7101 |
1403 |
|
Batch of SELEX experiment |
AI |
|
5 |
7101 |
355 |
14 |
0 |
|
Seed sequence |
NNGGATTANN |
|
6 |
0 |
0 |
118 |
7101 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1026 |
1454 |
481 |
7101 |
|
SELEX cycle |
2 |
|
8 |
7101 |
0 |
217 |
466 |
|
Number of repeats |
monomeric |
|
9 |
1896 |
762 |
2298 |
2145 |
|
Comment |
|
|
10 |
1019 |
3151 |
1655 |
1277 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
DPRX_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
DPRX |
|
1 |
870 |
1110 |
1230 |
571 |
|
TF group |
homeodomain |
|
2 |
1356 |
508 |
2425 |
364 |
|
Polypeptide used |
DBD |
|
3 |
335 |
338 |
3781 |
348 |
|
Ligand sequence |
TCGAAG30NAAT |
|
4 |
3781 |
1057 |
229 |
612 |
|
Batch of SELEX experiment |
AI |
|
5 |
0 |
35 |
14 |
3781 |
|
Seed sequence |
NRGATAATCYN |
|
6 |
3781 |
384 |
393 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3781 |
48 |
0 |
0 |
|
SELEX cycle |
2 |
|
8 |
49 |
8 |
272 |
3781 |
|
Number of repeats |
monomeric |
|
9 |
352 |
3781 |
153 |
140 |
|
Comment |
|
|
10 |
270 |
2611 |
351 |
1171 |
|
Representative
matrix |
no |
|
11 |
643 |
1189 |
1134 |
816 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|