|
|
CUX2_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
CUX2 |
|
1 |
106234 |
332 |
1663 |
1438 |
|
TF group |
CUT |
|
2 |
268 |
854 |
433 |
106234 |
|
Polypeptide used |
DBD |
|
3 |
570 |
106234 |
463 |
295 |
|
Ligand sequence |
TAGCCT40NCCT |
|
4 |
52303 |
709 |
53931 |
532 |
|
Batch of SELEX experiment |
AI |
|
5 |
106234 |
364 |
454 |
714 |
|
Seed sequence |
ATCRATNNNNNNATCRAT |
|
6 |
2136 |
357 |
314 |
106234 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
80908 |
6495 |
7430 |
11401 |
|
SELEX cycle |
3 |
|
8 |
52646 |
20732 |
9376 |
23480 |
|
Number of repeats |
dimeric |
|
9 |
41090 |
19937 |
17728 |
27479 |
|
Comment |
|
|
10 |
36025 |
20955 |
18244 |
31010 |
|
Representative matrix |
no |
|
11 |
37175 |
9176 |
19614 |
40270 |
|
|
|
|
12 |
20073 |
6469 |
7694 |
71999 |
|
|
|
|
13 |
106234 |
335 |
460 |
1497 |
|
|
|
|
14 |
523 |
934 |
382 |
106234 |
|
|
|
|
15 |
1082 |
106234 |
902 |
12404 |
|
|
|
|
16 |
2460 |
208 |
103775 |
309 |
|
Source: |
|
|
17 |
106234 |
305 |
756 |
358 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
4795 |
1795 |
413 |
106234 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
CUX2_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
CUX2 |
|
1 |
8111 |
4573 |
4247 |
45569 |
|
TF group |
CUT |
|
2 |
45569 |
5067 |
23534 |
12191 |
|
Polypeptide used |
DBD |
|
3 |
45569 |
250 |
540 |
345 |
|
Ligand sequence |
TAGCCT40NCCT |
|
4 |
479 |
1841 |
485 |
45569 |
|
Batch of SELEX experiment |
AI |
|
5 |
74 |
45569 |
94 |
736 |
|
Seed sequence |
TAATCRATAN |
|
6 |
13767 |
208 |
31803 |
395 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
45569 |
69 |
163 |
191 |
|
SELEX cycle |
3 |
|
8 |
396 |
278 |
66 |
45569 |
|
Number of repeats |
monomeric |
|
9 |
45569 |
11730 |
7587 |
12097 |
|
Comment |
|
|
10 |
19809 |
9534 |
5056 |
11171 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|