|
CUX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CUX1 |
1 |
18540 |
217 |
645 |
948 |
|
TF group |
CUT |
2 |
327 |
549 |
252 |
18540 |
|
Polypeptide used |
DBD |
3 |
448 |
18540 |
307 |
1083 |
|
Ligand sequence |
TAGCAG40NACT |
4 |
5977 |
268 |
12562 |
219 |
|
Batch of SELEX experiment |
AI |
5 |
18540 |
196 |
221 |
332 |
|
Seed sequence |
ATCRATNNNNNATCRAT |
6 |
1598 |
565 |
195 |
18540 |
|
Hamming distance of sequences to seed |
1 |
7 |
7788 |
4732 |
2182 |
3837 |
|
SELEX cycle |
3 |
8 |
7150 |
5224 |
3370 |
2796 |
|
Number of repeats |
dimeric |
9 |
4224 |
6088 |
4885 |
3344 |
|
Comment |
|
10 |
3402 |
3307 |
3606 |
8224 |
|
Representative matrix |
yes |
11 |
6466 |
1417 |
6842 |
3814 |
|
|
|
12 |
18540 |
217 |
639 |
793 |
|
|
|
13 |
245 |
338 |
184 |
18540 |
|
|
|
14 |
353 |
18540 |
235 |
371 |
|
|
|
15 |
7775 |
308 |
10764 |
196 |
|
Source: |
|
16 |
18540 |
198 |
246 |
478 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1425 |
414 |
165 |
18540 |
|
|
|
|
|
|
|
|
|
|
|
|
CUX1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CUX1 |
1 |
15138 |
139 |
384 |
888 |
|
TF group |
CUT |
2 |
262 |
380 |
170 |
15138 |
|
Polypeptide used |
DBD |
3 |
395 |
15138 |
271 |
1086 |
|
Ligand sequence |
TAGCAG40NACT |
4 |
4465 |
172 |
10673 |
115 |
|
Batch of SELEX experiment |
AI |
5 |
15138 |
125 |
190 |
283 |
|
Seed sequence |
ATCRATNNNNNNATCRAT |
6 |
1235 |
487 |
159 |
15138 |
|
Hamming distance of sequences to seed |
1 |
7 |
5584 |
4483 |
1547 |
3525 |
|
SELEX cycle |
3 |
8 |
6339 |
3897 |
2393 |
2510 |
|
Number of repeats |
dimeric |
9 |
3781 |
4679 |
4113 |
2566 |
|
Comment |
|
10 |
3599 |
4805 |
3851 |
2884 |
|
Representative matrix |
yes |
11 |
3168 |
2399 |
2939 |
6633 |
|
|
|
12 |
5521 |
1022 |
5784 |
2812 |
|
|
|
13 |
15138 |
156 |
461 |
612 |
|
|
|
14 |
209 |
345 |
182 |
15138 |
|
|
|
15 |
237 |
15138 |
184 |
492 |
|
|
|
16 |
6338 |
242 |
8801 |
184 |
|
Source: |
|
17 |
15138 |
188 |
251 |
423 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
1203 |
307 |
150 |
15138 |
|
|
|
|
|
|
|
|
|
|
|
|
CUX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
CUX1 |
1 |
4099 |
4649 |
2401 |
25659 |
|
TF group |
CUT |
2 |
25659 |
3296 |
15550 |
7605 |
|
Polypeptide used |
DBD |
3 |
25659 |
109 |
192 |
167 |
|
Ligand sequence |
TAGCAG40NACT |
4 |
71 |
294 |
77 |
25659 |
|
Batch of SELEX experiment |
AI |
5 |
51 |
25659 |
53 |
595 |
|
Seed sequence |
TAATCRATAN |
6 |
9580 |
264 |
16079 |
130 |
|
Hamming distance of sequences to seed |
1 |
7 |
25659 |
45 |
85 |
231 |
|
SELEX cycle |
3 |
8 |
150 |
95 |
29 |
25659 |
|
Number of repeats |
monomeric |
9 |
25659 |
9420 |
7560 |
7079 |
|
Comment |
|
10 |
8168 |
7633 |
3958 |
5900 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |