CTCF

 

 

 

 

A

C

G

T

 

Name

CTCF

1

5423

546

1733

4208

 

TF group

C2H2

2

2600

371

11366

632

 

Polypeptide used

full

3

0

8052

0

505

 

Ligand sequence

TAGCGA20NGCT

4

64

0

12480

86

 

Batch of SELEX experiment

AJ

5

641

9591

8

46

 

Seed sequence

NGCGCCMYCTAGYGGTN

6

46

10107

0

0

 

Hamming distance of sequences to seed

2

7

5823

5201

207

241

 

SELEX cycle

4

8

87

7091

0

3888

 

Number of repeats

monomeric

9

0

8872

1

0

 

Comment

 

10

37

49

23

14151

 

Representative matrix

yes

11

10566

290

1625

1355

 

 

 

12

90

1616

9828

764

 

 

 

13

183

5157

0

7952

 

 

 

14

2

0

8472

121

 

 

 

15

406

114

7463

2221

 

Source:

 

16

2660

4936

143

9766

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

4213

3590

2456

1302