Barhl1_m1

 

 

 

 

A

C

G

T

 

Name

Barhl1

1

1478

1657

1831

927

 

TF group

homeodomain

2

1304

2133

832

1624

 

Polypeptide used

DBD

3

599

53

0

5893

 

Ligand sequence

TCAGTC20NCG

4

5893

0

9

901

 

Batch of SELEX experiment

AC

5

5893

0

45

6

 

Seed sequence

NNTAAACGNN

6

5893

238

933

1816

 

Hamming distance of sequences to seed

1

7

444

5893

264

3287

 

SELEX cycle

2

8

1176

297

5893

916

 

Number of repeats

monomeric

9

1367

1393

1995

1137

 

Comment

 

10

939

1550

613

2790

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Barhl1_m2

 

 

 

 

A

C

G

T

 

Name

Barhl1

1

1214

1623

2123

1304

 

TF group

homeodomain

2

1127

2159

1121

1858

 

Polypeptide used

DBD

3

590

41

0

6265

 

Ligand sequence

TCAGTC20NCG

4

6265

0

53

181

 

Batch of SELEX experiment

AC

5

6265

0

39

3

 

Seed sequence

NNTAATTGNN

6

3241

418

1950

6265

 

Hamming distance of sequences to seed

1

7

1881

2017

1937

6265

 

SELEX cycle

2

8

1763

337

6265

677

 

Number of repeats

monomeric

9

1136

2053

1839

1236

 

Comment

 

10

985

1760

1195

2325

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Barhl1_d1

 

 

 

 

A

C

G

T

 

Name

Barhl1

1

189

26

1

4146

 

TF group

homeodomain

2

4146

9

32

325

 

Polypeptide used

DBD

3

4146

3

32

7

 

Ligand sequence

TCAGTC20NCG

4

1996

76

475

2150

 

Batch of SELEX experiment

AC

5

451

1754

403

2392

 

Seed sequence

TAAWYGNNNNTAAWYG

6

721

83

4146

325

 

Hamming distance of sequences to seed

1

7

639

1316

1264

927

 

SELEX cycle

3

8

421

1374

495

1855

 

Number of repeats

dimeric

9

737

1316

1533

560

 

Comment

 

10

764

1519

542

1320

 

Representative matrix

yes

11

183

28

2

4146

 

 

 

12

4146

0

29

434

 

 

 

13

4146

0

5

5

 

 

 

14

2151

60

495

1995

 

Source:

 

15

336

1897

389

2249

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

847

102

4146

382