BARX1_d1

 

 

 

 

A

C

G

T

 

Name

BARX1

1

420

1863

245

735

 

TF group

homeodomain

2

734

696

540

186

 

Polypeptide used

DBD

3

1696

305

235

134

 

Ligand sequence

TATTCG20NCTG

4

7

9

4

2200

 

Batch of SELEX experiment

AC

5

7

66

6

2166

 

Seed sequence

CNATTAAAWANCNATTA

6

1841

8

16

71

 

Hamming distance of sequences to seed

2

7

1720

115

148

416

 

SELEX cycle

3

8

1668

194

165

572

 

Number of repeats

dimeric

9

885

67

102

1033

 

Comment

 

10

1662

189

297

454

 

Representative matrix

yes

11

587

619

559

395

 

 

 

12

290

2124

259

293

 

 

 

13

628

520

1026

74

 

 

 

14

1716

396

191

213

 

 

 

15

4

4

0

2101

 

Source:

 

16

24

74

5

2097

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1860

13

36

157

 

 

 

 

 

 

 

 

 

 

 

 

BARX1_m1

 

 

 

 

A

C

G

T

 

Name

BARX1

1

1872

1821

2236

877

 

TF group

homeodomain

2

590

5138

246

1667

 

Polypeptide used

DBD

3

3339

1992

1386

87

 

Ligand sequence

TATTCG20NCTG

4

6805

207

192

0

 

Batch of SELEX experiment

AC

5

0

0

0

6805

 

Seed sequence

NYNATTAN

6

0

0

0

6805

 

Hamming distance of sequences to seed

1

7

6805

0

0

0

 

SELEX cycle

3

8

1917

1391

2420

1077

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764