|
BARHL2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
955 |
895 |
1091 |
612 |
|
TF group |
homeodomain |
2 |
1036 |
958 |
446 |
1113 |
|
Polypeptide used |
DBD |
3 |
337 |
0 |
0 |
3553 |
|
Ligand sequence |
TATTGT20NGTG |
4 |
3553 |
57 |
30 |
605 |
|
Batch of SELEX experiment |
AC |
5 |
3553 |
0 |
0 |
110 |
|
Seed sequence |
NNTAAACGNN |
6 |
3553 |
67 |
391 |
1209 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
3553 |
40 |
2406 |
|
SELEX cycle |
2 |
8 |
606 |
0 |
3553 |
309 |
|
Number of repeats |
monomeric |
9 |
860 |
647 |
1198 |
848 |
|
Comment |
|
10 |
696 |
776 |
479 |
1603 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
BARHL2_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
979 |
1178 |
1441 |
940 |
|
TF group |
homeodomain |
2 |
860 |
1423 |
788 |
1467 |
|
Polypeptide used |
DBD |
3 |
352 |
54 |
0 |
4538 |
|
Ligand sequence |
TATTGT20NGTG |
4 |
4538 |
0 |
123 |
76 |
|
Batch of SELEX experiment |
AC |
5 |
4538 |
0 |
0 |
0 |
|
Seed sequence |
NNTAATTGNN |
6 |
2385 |
218 |
949 |
4538 |
|
Hamming distance of sequences to seed |
1 |
7 |
954 |
1376 |
1045 |
4538 |
|
SELEX cycle |
2 |
8 |
1118 |
0 |
4538 |
365 |
|
Number of repeats |
monomeric |
9 |
905 |
1659 |
1070 |
904 |
|
Comment |
|
10 |
887 |
1174 |
826 |
1652 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
BARHL2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
276 |
74 |
16 |
3235 |
|
TF group |
homeodomain |
2 |
3235 |
12 |
65 |
280 |
|
Polypeptide used |
DBD |
3 |
3235 |
11 |
18 |
15 |
|
Ligand sequence |
TATTGT20NGTG |
4 |
1542 |
110 |
427 |
1693 |
|
Batch of SELEX experiment |
AC |
5 |
458 |
1314 |
376 |
1921 |
|
Seed sequence |
TAAWYGNNNNTAAWYG |
6 |
719 |
154 |
3235 |
464 |
|
Hamming distance of sequences to seed |
1 |
7 |
669 |
872 |
893 |
801 |
|
SELEX cycle |
3 |
8 |
480 |
936 |
441 |
1378 |
|
Number of repeats |
dimeric |
9 |
670 |
899 |
1128 |
538 |
|
Comment |
|
10 |
643 |
1034 |
441 |
1118 |
|
Representative matrix |
no |
11 |
297 |
82 |
25 |
3235 |
|
|
|
12 |
3235 |
14 |
67 |
433 |
|
|
|
13 |
3235 |
8 |
10 |
27 |
|
|
|
14 |
1644 |
77 |
439 |
1591 |
|
Source: |
|
15 |
363 |
1374 |
325 |
1861 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
900 |
145 |
3235 |
525 |
|
|
|
|
|
|
|
|
|
|
|
|
BARHL2_m3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
3318 |
3450 |
4374 |
1713 |
|
TF group |
homeodomain |
2 |
3328 |
4078 |
1756 |
3693 |
|
Polypeptide used |
full |
3 |
643 |
0 |
0 |
12855 |
|
Ligand sequence |
TCCAGT40NGAC |
4 |
12855 |
0 |
0 |
1969 |
|
Batch of SELEX experiment |
AI |
5 |
12855 |
0 |
0 |
0 |
|
Seed sequence |
NNTAAACGNN |
6 |
12855 |
116 |
1086 |
4032 |
|
Hamming distance of sequences to seed |
1 |
7 |
443 |
12855 |
127 |
7756 |
|
SELEX cycle |
3 |
8 |
1570 |
0 |
12855 |
1335 |
|
Number of repeats |
monomeric |
9 |
3606 |
2190 |
4877 |
2182 |
|
Comment |
|
10 |
2171 |
2997 |
1276 |
6411 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
23 |
|
|
|
|
|
|
|
|
BARHL2_m4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
2559 |
3919 |
5159 |
2898 |
|
TF group |
homeodomain |
2 |
2649 |
5106 |
2284 |
4495 |
|
Polypeptide used |
full |
3 |
214 |
0 |
0 |
14534 |
|
Ligand sequence |
TCCAGT40NGAC |
4 |
14534 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
14534 |
0 |
0 |
0 |
|
Seed sequence |
NNTAATTGNN |
6 |
6206 |
267 |
2725 |
14534 |
|
Hamming distance of sequences to seed |
1 |
7 |
2542 |
3836 |
2844 |
14534 |
|
SELEX cycle |
3 |
8 |
2886 |
0 |
14534 |
359 |
|
Number of repeats |
monomeric |
9 |
2964 |
4632 |
3920 |
3018 |
|
Comment |
|
10 |
2399 |
3972 |
2225 |
5937 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
BARHL2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
BARHL2 |
1 |
856 |
285 |
130 |
17113 |
|
TF group |
homeodomain |
2 |
17113 |
89 |
335 |
891 |
|
Polypeptide used |
full |
3 |
17113 |
98 |
116 |
68 |
|
Ligand sequence |
TCCAGT40NGAC |
4 |
7218 |
306 |
1495 |
9894 |
|
Batch of SELEX experiment |
AI |
5 |
1487 |
6571 |
1265 |
10542 |
|
Seed sequence |
TAAWYGNNNNTAAWYG |
6 |
2578 |
338 |
17113 |
1119 |
|
Hamming distance of sequences to seed |
1 |
7 |
3247 |
4540 |
5007 |
4319 |
|
SELEX cycle |
4 |
8 |
1609 |
5399 |
1822 |
8283 |
|
Number of repeats |
dimeric |
9 |
3161 |
5216 |
6529 |
2206 |
|
Comment |
|
10 |
3275 |
6140 |
1865 |
5832 |
|
Representative
matrix |
no |
11 |
636 |
163 |
83 |
17113 |
|
|
|
12 |
17113 |
91 |
139 |
1277 |
|
|
|
13 |
17113 |
63 |
30 |
51 |
|
|
|
14 |
7903 |
208 |
1296 |
9210 |
|
Source: |
|
15 |
1199 |
7341 |
1098 |
9771 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
2777 |
282 |
17113 |
1213 |
|
|
|