BARHL2_m1

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

955

895

1091

612

 

TF group

homeodomain

2

1036

958

446

1113

 

Polypeptide used

DBD

3

337

0

0

3553

 

Ligand sequence

TATTGT20NGTG

4

3553

57

30

605

 

Batch of SELEX experiment

AC

5

3553

0

0

110

 

Seed sequence

NNTAAACGNN

6

3553

67

391

1209

 

Hamming distance of sequences to seed

1

7

0

3553

40

2406

 

SELEX cycle

2

8

606

0

3553

309

 

Number of repeats

monomeric

9

860

647

1198

848

 

Comment

 

10

696

776

479

1603

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

BARHL2_m2

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

979

1178

1441

940

 

TF group

homeodomain

2

860

1423

788

1467

 

Polypeptide used

DBD

3

352

54

0

4538

 

Ligand sequence

TATTGT20NGTG

4

4538

0

123

76

 

Batch of SELEX experiment

AC

5

4538

0

0

0

 

Seed sequence

NNTAATTGNN

6

2385

218

949

4538

 

Hamming distance of sequences to seed

1

7

954

1376

1045

4538

 

SELEX cycle

2

8

1118

0

4538

365

 

Number of repeats

monomeric

9

905

1659

1070

904

 

Comment

 

10

887

1174

826

1652

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

BARHL2_d1

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

276

74

16

3235

 

TF group

homeodomain

2

3235

12

65

280

 

Polypeptide used

DBD

3

3235

11

18

15

 

Ligand sequence

TATTGT20NGTG

4

1542

110

427

1693

 

Batch of SELEX experiment

AC

5

458

1314

376

1921

 

Seed sequence

TAAWYGNNNNTAAWYG

6

719

154

3235

464

 

Hamming distance of sequences to seed

1

7

669

872

893

801

 

SELEX cycle

3

8

480

936

441

1378

 

Number of repeats

dimeric

9

670

899

1128

538

 

Comment

 

10

643

1034

441

1118

 

Representative matrix

no

11

297

82

25

3235

 

 

 

12

3235

14

67

433

 

 

 

13

3235

8

10

27

 

 

 

14

1644

77

439

1591

 

Source:

 

15

363

1374

325

1861

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

900

145

3235

525

 

 

 

 

 

 

 

 

 

 

 

 

BARHL2_m3

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

3318

3450

4374

1713

 

TF group

homeodomain

2

3328

4078

1756

3693

 

Polypeptide used

full

3

643

0

0

12855

 

Ligand sequence

TCCAGT40NGAC

4

12855

0

0

1969

 

Batch of SELEX experiment

AI

5

12855

0

0

0

 

Seed sequence

NNTAAACGNN

6

12855

116

1086

4032

 

Hamming distance of sequences to seed

1

7

443

12855

127

7756

 

SELEX cycle

3

8

1570

0

12855

1335

 

Number of repeats

monomeric

9

3606

2190

4877

2182

 

Comment

 

10

2171

2997

1276

6411

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

23

 

 

 

 

 

 

 

 

BARHL2_m4

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

2559

3919

5159

2898

 

TF group

homeodomain

2

2649

5106

2284

4495

 

Polypeptide used

full

3

214

0

0

14534

 

Ligand sequence

TCCAGT40NGAC

4

14534

0

0

0

 

Batch of SELEX experiment

AI

5

14534

0

0

0

 

Seed sequence

NNTAATTGNN

6

6206

267

2725

14534

 

Hamming distance of sequences to seed

1

7

2542

3836

2844

14534

 

SELEX cycle

3

8

2886

0

14534

359

 

Number of repeats

monomeric

9

2964

4632

3920

3018

 

Comment

 

10

2399

3972

2225

5937

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

BARHL2_d2

 

 

 

 

A

C

G

T

 

Name

BARHL2

1

856

285

130

17113

 

TF group

homeodomain

2

17113

89

335

891

 

Polypeptide used

full

3

17113

98

116

68

 

Ligand sequence

TCCAGT40NGAC

4

7218

306

1495

9894

 

Batch of SELEX experiment

AI

5

1487

6571

1265

10542

 

Seed sequence

TAAWYGNNNNTAAWYG

6

2578

338

17113

1119

 

Hamming distance of sequences to seed

1

7

3247

4540

5007

4319

 

SELEX cycle

4

8

1609

5399

1822

8283

 

Number of repeats

dimeric

9

3161

5216

6529

2206

 

Comment

 

10

3275

6140

1865

5832

 

Representative matrix

no

11

636

163

83

17113

 

 

 

12

17113

91

139

1277

 

 

 

13

17113

63

30

51

 

 

 

14

7903

208

1296

9210

 

Source:

 

15

1199

7341

1098

9771

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

2777

282

17113

1213