Alx1_m1

 

 

 

 

A

C

G

T

 

Name

Alx1

1

6727

12906

5960

22850

 

TF group

homeodomain

2

4591

22778

6097

14978

 

Polypeptide used

DBD

3

4146

14443

1642

34001

 

Ligand sequence

TAAAGC20NCG

4

48444

726

3524

1113

 

Batch of SELEX experiment

Z

5

48444

157

287

254

 

Seed sequence

NNYAATTANN

6

165

282

41

48444

 

Hamming distance of sequences to seed

1

7

1862

2623

340

48444

 

SELEX cycle

3

8

48444

1774

76

3148

 

Number of repeats

monomeric

9

17454

9218

15257

6515

 

Comment

 

10

18331

14142

9226

6745

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Alx1_d1

 

 

 

 

A

C

G

T

 

Name

Alx1

1

8963

11812

5376

9703

 

TF group

homeodomain

2

4597

2047

405

35854

 

Polypeptide used

DBD

3

35854

292

1532

2296

 

Ligand sequence

TAAAGC20NCG

4

35854

44

68

29

 

Batch of SELEX experiment

Z

5

1685

7124

811

35854

 

Seed sequence

NTAATYNRATTAN

6

1010

13901

2678

21953

 

Hamming distance of sequences to seed

1

7

11725

7577

5361

11191

 

SELEX cycle

3

8

27619

4067

8235

867

 

Number of repeats

dimeric

9

35854

1222

2923

930

 

Comment

 

10

23

119

28

35854

 

Representative matrix

no

11

3263

2390

248

35854

 

 

 

12

35854

440

1041

2819

 

Source:

 

13

12818

8789

7012

7236

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764