|
Alx1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Alx1 |
1 |
6727 |
12906 |
5960 |
22850 |
|
TF group |
homeodomain |
2 |
4591 |
22778 |
6097 |
14978 |
|
Polypeptide used |
DBD |
3 |
4146 |
14443 |
1642 |
34001 |
|
Ligand sequence |
TAAAGC20NCG |
4 |
48444 |
726 |
3524 |
1113 |
|
Batch of SELEX experiment |
Z |
5 |
48444 |
157 |
287 |
254 |
|
Seed sequence |
NNYAATTANN |
6 |
165 |
282 |
41 |
48444 |
|
Hamming distance of sequences to seed |
1 |
7 |
1862 |
2623 |
340 |
48444 |
|
SELEX cycle |
3 |
8 |
48444 |
1774 |
76 |
3148 |
|
Number of repeats |
monomeric |
9 |
17454 |
9218 |
15257 |
6515 |
|
Comment |
|
10 |
18331 |
14142 |
9226 |
6745 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Alx1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Alx1 |
1 |
8963 |
11812 |
5376 |
9703 |
|
TF group |
homeodomain |
2 |
4597 |
2047 |
405 |
35854 |
|
Polypeptide used |
DBD |
3 |
35854 |
292 |
1532 |
2296 |
|
Ligand sequence |
TAAAGC20NCG |
4 |
35854 |
44 |
68 |
29 |
|
Batch of SELEX experiment |
Z |
5 |
1685 |
7124 |
811 |
35854 |
|
Seed sequence |
NTAATYNRATTAN |
6 |
1010 |
13901 |
2678 |
21953 |
|
Hamming distance of sequences to seed |
1 |
7 |
11725 |
7577 |
5361 |
11191 |
|
SELEX cycle |
3 |
8 |
27619 |
4067 |
8235 |
867 |
|
Number of repeats |
dimeric |
9 |
35854 |
1222 |
2923 |
930 |
|
Comment |
|
10 |
23 |
119 |
28 |
35854 |
|
Representative
matrix |
no |
11 |
3263 |
2390 |
248 |
35854 |
|
|
|
12 |
35854 |
440 |
1041 |
2819 |
|
Source: |
|
13 |
12818 |
8789 |
7012 |
7236 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |