|
|
AR_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
AR |
|
1 |
1723 |
424 |
957 |
990 |
|
TF group |
nuclearreceptor |
|
2 |
1585 |
13 |
2392 |
42 |
|
Polypeptide used |
DBD |
|
3 |
11 |
0 |
5174 |
46 |
|
Ligand sequence |
TGCTCG20NGA |
|
4 |
1308 |
433 |
281 |
2057 |
|
Batch of SELEX experiment |
AF |
|
5 |
2983 |
2 |
5 |
14 |
|
Seed sequence |
RRGWACANNNTGTWCYY |
|
6 |
1 |
2510 |
3 |
15 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
2837 |
14 |
943 |
102 |
|
SELEX cycle |
3 |
|
8 |
497 |
1423 |
312 |
835 |
|
Number of repeats |
dimeric |
|
9 |
485 |
999 |
1710 |
446 |
|
Comment |
|
|
10 |
1245 |
328 |
1538 |
639 |
|
Representative matrix |
no |
|
11 |
82 |
1101 |
12 |
2616 |
|
|
|
|
12 |
16 |
0 |
5146 |
10 |
|
|
|
|
13 |
29 |
0 |
19 |
3890 |
|
|
|
|
14 |
1885 |
175 |
441 |
1404 |
|
|
|
|
15 |
17 |
2514 |
0 |
8 |
|
Source: |
|
|
16 |
20 |
2110 |
21 |
653 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
367 |
1712 |
357 |
1055 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
AR_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
AR |
|
1 |
1094 |
167 |
1555 |
286 |
|
TF group |
nuclearreceptor |
|
2 |
939 |
17 |
2221 |
19 |
|
Polypeptide used |
full |
|
3 |
8 |
0 |
3837 |
6 |
|
Ligand sequence |
TCTTCT20NCTG |
|
4 |
1197 |
291 |
184 |
1027 |
|
Batch of SELEX experiment |
AD |
|
5 |
2167 |
5 |
3 |
3 |
|
Seed sequence |
RRGWACANNNTGTWCYY |
|
6 |
4 |
2189 |
5 |
2 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1997 |
20 |
273 |
11 |
|
SELEX cycle |
4 |
|
8 |
199 |
1228 |
328 |
712 |
|
Number of repeats |
dimeric |
|
9 |
561 |
611 |
991 |
509 |
|
Comment |
|
|
10 |
755 |
250 |
1673 |
207 |
|
Representative matrix |
no |
|
11 |
33 |
277 |
8 |
2529 |
|
|
|
|
12 |
0 |
4 |
3618 |
1 |
|
|
|
|
13 |
22 |
4 |
0 |
2768 |
|
|
|
|
14 |
1195 |
112 |
230 |
1094 |
|
|
|
|
15 |
7 |
2166 |
0 |
8 |
|
Source: |
|
|
16 |
32 |
1542 |
2 |
829 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
430 |
1092 |
343 |
913 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Ar_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Ar |
|
1 |
4573 |
2475 |
5855 |
4717 |
|
TF group |
nuclearreceptor |
|
2 |
4564 |
109 |
7947 |
633 |
|
Polypeptide used |
DBD |
|
3 |
0 |
0 |
16837 |
534 |
|
Ligand sequence |
TCTAAT20NCG |
|
4 |
3666 |
2442 |
1328 |
10486 |
|
Batch of SELEX experiment |
P |
|
5 |
8672 |
0 |
27 |
210 |
|
Seed sequence |
RRGNACANNNTGTNCYY |
|
6 |
0 |
11745 |
0 |
59 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
8563 |
0 |
3022 |
635 |
|
SELEX cycle |
4 |
|
8 |
944 |
6294 |
2786 |
5775 |
|
Number of repeats |
dimeric |
|
9 |
2684 |
3355 |
6521 |
4175 |
|
Comment |
|
|
10 |
5188 |
1713 |
8701 |
1761 |
|
Representative matrix |
yes |
|
11 |
537 |
3120 |
55 |
14842 |
|
|
|
|
12 |
12 |
0 |
20062 |
0 |
|
|
|
|
13 |
227 |
0 |
48 |
13633 |
|
|
|
|
14 |
9591 |
976 |
2905 |
4515 |
|
|
|
|
15 |
366 |
7823 |
20 |
36 |
|
Source: |
|
|
16 |
496 |
5712 |
270 |
3573 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
3734 |
3903 |
5116 |
4811 |
|
|
|