|
|
ALX4_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ALX4 |
|
1 |
2884 |
3856 |
1552 |
2482 |
|
TF group |
homeodomain |
|
2 |
2186 |
1284 |
275 |
10774 |
|
Polypeptide used |
DBD |
|
3 |
10774 |
234 |
977 |
999 |
|
Ligand sequence |
TGTGTC20NGA |
|
4 |
10774 |
42 |
50 |
18 |
|
Batch of SELEX experiment |
W |
|
5 |
963 |
3311 |
420 |
10774 |
|
Seed sequence |
NTAATYNRATTAN |
|
6 |
657 |
4822 |
1299 |
5952 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3186 |
2891 |
1855 |
2842 |
|
SELEX cycle |
2 |
|
8 |
8139 |
1760 |
2636 |
518 |
|
Number of repeats |
dimeric |
|
9 |
10774 |
628 |
1038 |
414 |
|
Comment |
|
|
10 |
38 |
123 |
22 |
10774 |
|
Representative matrix |
no |
|
11 |
1832 |
1816 |
225 |
10774 |
|
|
|
|
12 |
10774 |
317 |
547 |
1131 |
|
Source: |
|
|
13 |
3400 |
3169 |
2105 |
2101 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Alx4_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Alx4 |
|
1 |
3777 |
3624 |
2119 |
2915 |
|
TF group |
homeodomain |
|
2 |
3027 |
1080 |
272 |
12435 |
|
Polypeptide used |
DBD |
|
3 |
12435 |
179 |
1090 |
975 |
|
Ligand sequence |
TGGTAG20NCG |
|
4 |
12435 |
23 |
33 |
15 |
|
Batch of SELEX experiment |
P |
|
5 |
936 |
2495 |
370 |
12435 |
|
Seed sequence |
NTAATYNRATTAN |
|
6 |
782 |
4906 |
1532 |
7529 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
4169 |
2828 |
2114 |
3324 |
|
SELEX cycle |
2 |
|
8 |
9406 |
1732 |
3029 |
597 |
|
Number of repeats |
dimeric |
|
9 |
12435 |
462 |
1024 |
383 |
|
Comment |
|
|
10 |
20 |
64 |
11 |
12435 |
|
Representative
matrix |
no |
|
11 |
1913 |
1824 |
183 |
12435 |
|
|
|
|
12 |
12435 |
214 |
563 |
1402 |
|
Source: |
|
|
13 |
4303 |
3227 |
2407 |
2498 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|