ALX3_m1

 

 

 

 

A

C

G

T

 

Name

ALX3

1

6521

4526

10609

3720

 

TF group

homeodomain

2

3442

11997

4434

5505

 

Polypeptide used

DBD

3

1964

8742

766

16634

 

Ligand sequence

TGTAAA20NAAG

4

25377

1564

1074

1745

 

Batch of SELEX experiment

Z

5

25377

778

333

487

 

Seed sequence

NNYAATTANN

6

163

275

48

25377

 

Hamming distance of sequences to seed

1

7

1108

1132

1018

25377

 

SELEX cycle

2

8

25377

510

139

2046

 

Number of repeats

monomeric

9

8201

4382

8698

4095

 

Comment

 

10

5758

10329

5294

3996

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

ALX3_m2

 

 

 

 

A

C

G

T

 

Name

ALX3

1

1251

2174

1062

3390

 

TF group

homeodomain

2

987

3402

1150

2337

 

Polypeptide used

full

3

794

3367

345

4510

 

Ligand sequence

TGCAAG20NGA

4

7877

506

885

629

 

Batch of SELEX experiment

AE

5

7877

317

141

231

 

Seed sequence

NNYAATTANN

6

76

72

8

7877

 

Hamming distance of sequences to seed

1

7

697

729

239

7877

 

SELEX cycle

2

8

7877

449

87

977

 

Number of repeats

monomeric

9

2597

1671

2205

1403

 

Comment

 

10

2759

2446

1503

1168

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

ALX3_d1

 

 

 

 

A

C

G

T

 

Name

ALX3

1

1115

1347

610

1057

 

TF group

homeodomain

2

714

353

76

4128

 

Polypeptide used

full

3

4128

46

208

374

 

Ligand sequence

TGCAAG20NGA

4

4128

15

13

7

 

Batch of SELEX experiment

AE

5

210

889

98

4128

 

Seed sequence

NTAATYNRATTAN

6

188

1737

381

2391

 

Hamming distance of sequences to seed

1

7

1170

948

673

1337

 

SELEX cycle

2

8

3221

562

907

147

 

Number of repeats

dimeric

9

4128

168

340

124

 

Comment

 

10

10

26

9

4128

 

Representative matrix

no

11

631

365

49

4128

 

 

 

12

4128

98

181

446

 

Source:

 

13

1302

1143

812

871

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764